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發(fā)表英文論文：
1. Li, Y., et al. (2021). "Transcription-coupled structural dynamics of topologically associating domains regulate replication origin efficiency." Genome Biol 22(1): 206.
2. Qin, J., Guo, Y., Xue, B., Shi, P., Chen, Y., Su, Q.P., Hao, H., Zhao, S., Wu, C., Yu, L., Li, D. *, Sun, Y.*, ER-mitochondria contacts promote mtDNA nucleoids active transportation via mitochondrial dynamic tubulation, Nat Comm. 2020, 11(1): 4471
3. Qian Peter Su*, Ziqing Winston Zhao*, Luming Meng, Miao Ding, Weiwei Zhang, Yongzheng Li, Mengzhu Liu, Rongqin Li, Yi-Qin Gao, Xiaoliang Sunney Xie*, and Yujie Sun* Super-resolution Imaging Reveals Spatio-temporal Propagation of Human Replication Foci Mediated by CTCF-organized Chromatin Structures. Proc. Natl. Acad. Sci. USA 2020, 117 (26): 15036-15046 https://doi.org/10.1073/pnas.2001521117
4. Mian Wei, Xiaoying Fan, Miao Ding, Ruifeng Li, Shipeng Shao, Yingping Hou, Shaoshuai Meng, Fuchou Tang, Cheng Li, Yujie Sun, Nuclear actin regulates inducible transcription by enhancing RNA polymerase II clustering, Science Advances 2020; 6 : eaay6515
5. Hao, H., Niu, J., Xue, B., Su, Q. P., Liu, M., Yang, J., Qin, J., Zhao, S., Wu, C.*, Sun, Y.*, Golgi-associated microtubules are fast cargo tracks and required for persistent cell migration, EMBO Rep 2020, 21:e48385.
6. Shipeng Shao, Lei Chang, Yuao Sun, Yingping Hou, Xiaoying Fan, Yujie Sun, `Multiplexed sgRNA Expression Allows Versatile Single Non-repetitive DNA Labeling and Endogenous Gene Regulation`, ACS Synthetic Biology, accepted
7. Multicolor Photo-Crosslinkable AIEgens towards Compact Nanodots for Subcellular Imaging and STED Nanoscopy, Small，accepted
8. Chen X, Liu Z, Li R, Shan C, Zeng Z, Xue B, Yuan W, Mo C, Xi P, Wu C, Sun Y., “Multicolor Super-resolution Fluorescence Microscopy with Blue and Carmine Small Photoblinking Polymer Dots.”, ACS Nano. 2017 doi: 10.1021/acsnano.7b02893.
9. Shipeng Shao, Lei Chang, Yingping Hou, Yujie Sun, “Illuminating the structure and dynamics of chromatin by fluorescence labeling”, Front. Biol. DOI 10.1007/s11515-017-1454-2
10. Wang S, Ding M, Chen X, Chang L, Sun Y. “Development of bimolecular fluorescence complementation using rsEGFP2 for detection and super-resolution imaging of protein-protein interactions in live cells.”, Biomed Opt Express. 2017, 8(6):3119-3131.
11. Zhucheng Chen, Ruifang Guan, Lei Zhang, Qian Su, Keith mickolajczyk, Geng-Yuan Chen, William Hancock, Yujie Sun, and Yongfang Zhao, “Crystal structure of Zen4 in the apo state reveals a missing conformation of kinesin”, Nature Comm. 2017, 8:14951
12. Han X, Li P, Yang Z, Huang X, Wei G, Sun Y, Kang X, Hu X, Deng Q, Chen L, He A, Huo Y, Li D, Betzig E, Luo J., “Zyxin regulates endothelial von Willebrand factor secretion by reorganizing actin filaments around exocytic granules.”, Nat Commun. 2017, 8:14639.
13. Xuanze Chen, Rongqin Li, Zhihe Liu, Kai Sun, Zezhou Sun, Danni Chen, Gaixia Xu, Peng Xi, Changfeng Wu,* & Yujie Sun*, “Photoblinking small semiconductor polymer dots for fluorescence nanoscopy”, Adv. Mater. . 2017, 29(5):1604850.doi: 10.1002/adma.201604850. (*co-corresponding, VIP paper & cover story)
14. Hu H, Zhang H, Wang S, Ding M, An H, Hou Y, Yang X, Wei W, Sun Y, Tang C., “Live visualization of genomic loci with BiFC-TALE”, Sci. Rep. 2017, 7:40192.
15. Burgess S, Cheng L, Gu F, Huang J, Huang Z, Lin S, Li J, Li W, Qin W, Sun Y, Songyang Z, Wei W, Wu Q, Wang H, Wang X, Xiong JW, Xi J, Yang H, Zhou B, Zhang B., “Questions about NgAgo”, Protein Cell 2016, 7(12):913-915.
16. Sheng Wang, Xuanze Chen, Lei Chang, Ruiying Xue, Haifeng Duan, and Yujie Sun, “GMars-Q Enables Long-Term Live-Cell Parallelized Reversible Saturable Optical Fluorescence Transitions Nanoscopy”, ACS Nano 2016, 10:9136–9144 (cover story)
17. Shen M, Zhang N, Zheng S, Zhang WB, Zhang HM, Lu Z, Su QP, Sun Y, Ye K, Li XD, “Calmodulin in complex with the first IQ motif of myosin-5a functions as an intact calcium sensor”, Proc. Natl. Acad. Sci. USA 2016, 113(40):E5812-E5820.
18. Xuanze Chen, Zhiping Zeng, Rongqin Li, Boxin Xue, Peng Xi* and Yujie Sun*, “Superior performance with sCMOS over EMCCD in Super-resolution Optical Fluctuation Imaging (SOFI)”, J. Biomed. Optics 2016, 6:066007 (*co-corresponding)
19. Pu Y, Zhao Z, Li Y, Zou J, Ma Q, Zhao Y, Ke Y, Zhu Y, Chen H, Baker MA, Ge H, Sun Y, Xie XS, Bai F, “Enhanced Efflux Activity Facilitates Drug Tolerance in Dormant Bacterial Cells”, Mol Cell. 2016, 62(2):284-94.
20. Xuanze Chen, Weijian Zong,Rongqin Li, Zhiping Zeng, Jia Zhao, Peng Xi, Liangyi Chen and Yujie Sun, “Two-photon light-sheet nanoscopy by fluorescence fluctuation correlation analysis”, Nanoscale 2016, 8: 9982–9987.
21. Wanqing Du, Qian Peter Su, Yang Chen, Yueyao Zhu, Dong Jiang, Yueguang Rong, Senyan Zhang, Yixiao Zhang, He Ren, Chuanmao Zhang, Xinquan Wang, Ning Gao, Yanfeng Wang, Lingfei Sun, Yujie Sun* and Li Yu*, “Kinesin 1 Drives Autolysosome Tubulation”, Dev. Cell 2016, 37: 326–336 (*co-corresponding)
22. Qian Peter Su, Wanqing Du, Qinghua Ji, Boxin Xue, Dong Jiang, Yueyao Zhu, Jizhong Lou, Li Yu*, and Yujie Sun*, “Vesicle Size Regulates Nanotube Formation in the Cell”, Sci. Rep. 2016, 6:24002 (*co-corresponding)
23. Xuanze Chen, Mian Wei, M. Mocarlo Zheng, Jiaxi Zhao, Huiwen Hao, Lei Chang, Peng Xi, and Yujie Sun, “Study of RNA Polymerase II Clustering insideLive-Cell Nuclei Using Bayesian Nanoscopy”, ACS Nano 2016, 10: 2447–2454.
24. Shipeng Shao, Weiwei Zhang, Huan Hu, Boxin Xue, Jinshan Qin, Chaoying Sun, Yuao Sun, Wensheng Wei, Yujie Sun, “Long-term Dual-color Tracking of Genomic Loci by Modified sgRNAs of the CRISPR/Cas9 System”, Nucleic Acids Res. 2016, 44: e86
25. Wang G, Li Y, Wang P, Liang H, Cui M, Zhu M, Guo L, Su Q, Sun Y, McNutt MA, Yin Y, “PTEN regulates RPA1 and protects DNA replication forks”, Cell Res. 2015, 25(11): 1189-204.
26. Gu C, Zhang J, Yang YI, Chen X, Ge H, Sun Y, Su X, Yang L, Xie S1, Gao YQ, “DNA Structural Correlation in Short and Long Ranges”, J. Phys. Chem. B 2015,119(44):13980-90
27. Chong Wang, Wanqing Du, Qian Peter Su, Mingli Zhu, Peiyuan Feng, Ying Li, Yichen Zhou, Na Mi, Yueyao Zhu, Dong Jiang, Senyan Zhang, Zerui Zhang, Yujie Sun* and Li Yu*, “Dynamic tubulation of mitochondria drives mitochondrial network formation”, Cell Res. 2015, 25:1108-20 (*co-corresponding)
28. Na Mi, Yang Chen, Shuai Wang, Mengran Chen, Mingkun Zhao, Guang Yang, Meisheng Ma, Qian Su, Sai Luo, Jingwen Shi, Jia Xu, Qiang Guo, Ning Gao, Yujie Sun, Zhucheng Chen, Li Yu, “CapZ regulates autophagosomal membrane shaping by promoting actin assembly inside the isolation membrane”, Nature Cell Biol. 2015, 17:1112-23
29. Yongliang Li, Zhen Liu, Yifei Zhang, Qian P. Su, Boxin Xue, Shipeng Shao, Yun Zhu, Xiao Xu, Shicheng Wei, Yujie Sun, “Live-cell and super-resolution imaging reveal that the distribution of wall-associated protein A is correlated with the cell chain integrity of Streptococcus mutans”, Mol. Oral Microbiol. 2015, 30:376-83
30. X. Zhang, X. Chen, Z. Zeng, M. Zhang, Y. Sun, P. Xi*, J. Peng*, and P. Xu*, “Development of a reversibly switchable protein for super-resolution optical fluctuation imaging”, ACS Nano 2015, 9:2659-67
31. 蘇乾, 劉振, 薛博鑫, 孫育杰，”超高分辨率熒光顯微成像: 2014 年諾貝爾化學(xué)獎(jiǎng)解析”, Chin. Sci. Bull. 2014, 59(34):3342-3
32. Weijian Zong, Jia Zhao, Xuanyang Chen, Yuan Lin, Huixia Ren, Yunfeng Zhang, Ming Fan, Zhuan Zhou, Heping Cheng, Yujie Sun* and Liangyi Chen*, “Large-field high-resolution two-photon digital scanned light-sheet microscopy”, Cell Res.2014,5:1-4 (*co-corresponding)
33. 趙新生,高毅勤, 黃巖誼, 孫育杰, 葛顥, 王任小, 徐平勇, 尉志武, “生物物理化學(xué)研究進(jìn)展”, 化學(xué)通報(bào), 2014, 77(7):699-702
34. Zhen Liu, Dong Xing, Qian Su, Xinyu Kong, Jiamei Zhang,Boxin Xue, Hao Sun, Sheng Wang, Yile Tao, Yujie Sun, “Super-resolution Imaging and Tracking of Protein-Protein Interaction in Subdiffraction Cellular Space”, Nature Comm. 2014, 5:4443-4449
35. Zekuan Lu, Xiao-Nan Ma, Hai-Man Zhang,Huan-Hong Ji, Hao Ding, Jie Zhang, Dan Luo,Yujie Sun, and Xiang-dong Li, “Mouse myosin-19 is a plus-end-directed, high-duty molecular motor”, J. Biol. Cell 2014, 289(26): 18535-48
36. Sangjin Kim, Erik Broströmer, Dong Xing, Jianshi Jin, Shasha Chong, HaoGe, Siyuan Wang, Chan Gu, Lijiang Yang, Yi Qin Gao, Xiao-dong Su*, Yujie Sun*, X. Sunney Xie*, “Probing Allostery Through DNA”, Science 2013, 339:816-819 (*co-corresponding)
37. Caporizzo, MA; Sun, Y; Goldman, YE; Composto, RJ, “Nanoscale Topography Mediates the Adhesion of F-Actin”, Langmuir 2012, 28: 12216 -12224.
38. Jianglan Liu, Yuting Zhao, Yujie Sun, Bing He, Changsong Yang, Tatyana Svitkina, Yale E. Goldman,and Wei Guo, “Exo70 Stimulates the Arp2/3 Complexfor Lamellipodia Formationand Directional Cell Migration”, Curr. Biol. 2012, 22: 1–7.
39. Beausang JF, Sun Y, Quinlan ME, Forkey JN, Goldman YE., “Orientation and Rotational Motions of Single Molecules by Polarized Total Internal Reflection Fluorescence Microscopy (polTIRFM)”, Cold Spring Harb Protoc. 2012, 5: 535-545.
40. Beausang JF, Sun Y, Quinlan ME, Forkey JN, Goldman YE., “Fluorescent Labeling of Myosin V for Polarized Total InternalReflection Fluorescence Microscopy (polTIRFM) Motility Assays”, Cold Spring Harb Protoc. 2012, 5: 616-625.
41. Yujie Sun, Yale E. Goldman, “Lever Arm Mechanics of Processive Myosins”, Biophys. J. 2011, 101: 1-11.
42. Jung H. Park, Yujie Sun, Yale E. Goldman, and Russell J. Composto, “Tunable Nanoscale Channels in Diblock Copolymer Films for Biomolecule Organization”, Langmuir 2010, 26: 10961-10967.
43. Yujie Sun, Osamu Sato, Felix Ruhnow, Mark E. Arsenault, Mitsuo Ikebe, and Yale E. Goldman, “Single Molecule Stepping and Structural Dynamics of Myosin X”, Nat. Struct. Mol. Biol. 2010, 17: 485-491 .
44. Yujie Sun, Harry W. Schroeder III, John F. Beausang, Kazuaki Homma, Mitsuo Ikebe, and Yale E. Goldman, “Myosin VI lever arm rotation: Fixedor variable?”, Proc.Natl. Acad. Sci. U.S.A. 2010, 107: E63.
45. Jung H. Park, Yujie Sun, Yale E. Goldman, and Russell J. Composto, “Self-Assembled Charged Hydrogels Control the Alignment of Filamentous Actin”, Soft Matter, 2010, 6: 915-21.
46. Yujie Sun, Jennine D. McKenna, John M. Murray, E. Michael Ostap and Yale E. Goldman, “Parallax: High Accuracy Three-Dimensional Single Molecule Tracking Using Split Images”, Nano Letters 2009, 9: 2676-2682.
47. Mark E. Arsenault, Yujie Sun, Haim H. Bau, Yale E. Goldman, “Using Electrical and Optical Tweezers to Facilitate Studies of Molecular Motors”, Phys Chem Chem Phys, 2009, 11: 4834-4839.
48. Jung H. Park, Yujie Sun, Yale E. Goldman, and Russell J. Composto, “Amphiphilic Block Copolymer Films: Phase Transition, Stabilization, and Nanoscale Templates”, Macromolecules 2009, 42: 1017-1023.
49. S. Lihong, W. Yiguang, Q. Shengru, Z. Jiaoqiang, Z. Xu, G. Lingjun, S. Lihua, Sun Yujie, A. Yanling, C. Qin, Co3O4 mono-dispersed nanoparticle solubility in high-purity water, Micro & Nano Lett, 2009, 4: 48–52.
50. Yujie Sun, Harry W. Schroeder III, John F. Beausang, Kazuaki Homma, Mitsuo Ikebe, and Yale E. Goldman, “Myosin VI walks “wiggly” on actin with large and variable tilting”, Mol Cell 2007, 28: 954-964.
51. Yujie Sun, Gilbert C Walker, “Viscoelastic Response of Poly-(dimethylsiloxane) in Adhesive Interaction with AFM tips”, Langmuir 2005, 21: 8694-8702.
52. Gilbert C. Walker,Yujie Sun,Senli Guo,John A. Finlay, Maureen E.Callow, James A. Callow, “Surface Mechanical Properties of the Adhesive of the Green Alga Ulva”, J Adhesion 2005, 81: 1101-1118.
53. Yujie Sun, Senli Guo, Chris Kavanagh; Geoff Swain, Gilbert C. Walker. “Surface elastic modulus of barnacle adhesive and release characteristics from silicone surfaces”, Polymer Preprints 2005, 46: 475-476.
54. Yujie Sun,Chris Kavanagh,Senli Guo, Gilbert C. Walker, Geoff Swain“Surface Modulus of Barnacle Baseplates and Barnacle Bioadhesion Studied by Atomic Force Microscopy”, Biofouling 2004, 20: 279-289.
55. Yujie Sun, Boris Akhremitchev, Gilbert C. Walker “Using the Adhesive Interaction between AFM tips and Polymer Surfaces to Measure the Elastic Modulus of Compliant Samples”, Langmuir 2004, 20: 5837-5845.
56. Sang Beom Lee, Richard R. Koepsel, Scott W. Morley, Krzysztof Matyjaszewski, Yujie Sun, and Alan J. Russell “Permanent, Nonleaching Antibacterial Surfaces. 1.Synthesis by Atom Transfer Radical Polymerization”, Biomacromolecules 2004, 5: 877-882.
57. Boris B. Akhremitchev, Jason E. Bemis, Sabah al-Maawali, Yujie Sun, Larissa Stebounova; Gilbert C. Walker “Application of scanning force and near field microscopies to the characterization of minimally adhesive polymer surfaces”, Biofouling 2003, 19: 99-104.
58. Yujie Sun; Boris Akhremitchev; Gilbert C. Walker. “Studying the surface modulus of polymers using atomic force microscopy”, Polymer. Mater. Sci.& Eng. 2003, 88: 417.
59. Yujie Sun, Gilbert C. Walker, `Two-Dimensional-Self-Assembly of Latex Particles in Wetting Films on Patterned Polymer Surfaces`, J. Phys. Chem. B. 2002, 106: 2217-2223.
60. Boris B. Akhremitchev; Yujie Sun; Larissa Stebounova; Gilbert C. Walker. “Monolayer-sensitive infrared imaging of DNA stripes using apertureless near-field microscopy”, Langmuir 2002, 18: 5325-5328.
61. Nengwu Zheng, Tao Zhou, Tao Wang, Ruyi Yang, Yujie Sun, Feng Wang, and Chaoguang Chen, “Ground-state atomic ionization energies for Z=2 – 18 and up to 18 electrons”, Phys. Rev. A 2002, 65: 052510.
62. Nengwu Zheng, Yujie Sun, Dongxia Ma, Ruyi Yang, Tao Zhou; Tao Wang. “Theoretical study on regularity of changes in quantum defects in Rydberg state series of many-valence electron atoms within WBEPM theory”, Int. J. Quantum Chem. 2001, 81: 232-237.
63. Nengwu Zheng, Yujie Sun, Tao Wang, Dongxia Ma, Yi Zhang, Wei Su. “Transition probability of lithium atom and lithiumlike ions with weakest bound electron wave functions and coupled equations”, Int. J. Quantum Chem. 2000, 76: 51-61.
64. Nengwu Zheng, Yujie Sun, “The regularities of the Rydberg energy levels of many-valence electron atom Al” , Science in China, Series B. 2000, 43: 113-120.
65. Nengwu Zheng, Tao Wang, Tao Zhou, Yujie Sun, Wei Su; Yi Zhang. “Study of transition probability of low states of alkali metal atoms with WBEPM theory”, J. Phys. Soc. Japan 1999, 68(12): 3859-3862.
66. Nengwu Zheng, Yujie Sun, Wei Su, “The radial expectation values for ground neutral atom (Z=2-54)”, Acta Phys-Chim Sin. 1999, 15:443-448.
67. Yujie Sun, Tao Wang, Nengwu Zheng, “Design and application of object-oriented database of radial expectation values for ground-state atoms and ions (Z = 2-54)”, Comput. Appl. Chem. 1998, 15: 369-372.
發(fā)表中文論文：
1 基態(tài)中性原子(Z=2-54)徑向距離的期望值 鄭能武; 孫育杰; 蘇體; 曾嶸; 張毅 中國(guó)科學(xué)技術(shù)大學(xué)化學(xué)系 【期刊】物理化學(xué)學(xué)報(bào) 1999-05-15
2 多價(jià)電子原子Al的Rydberg態(tài)能級(jí)的規(guī)律性研究 鄭能武; 孫育杰 中國(guó)科學(xué)技術(shù)大學(xué)化學(xué)系 【期刊】中國(guó)科學(xué)(B輯) 2000-02-20
3 基態(tài)原子、離子(Z=2-54)及其電子軌道徑向距離期望值的面向?qū)ο髷?shù)據(jù)庫(kù)的設(shè)計(jì)及應(yīng)用 孫育杰; 王濤; 鄭能武 中國(guó)科學(xué)技術(shù)大學(xué)化學(xué)系 【期刊】計(jì)算機(jī)與應(yīng)用化學(xué) 1998-11-28
孫育杰，男，1973年出生，博士。現(xiàn)任北京大學(xué)未來(lái)技術(shù)學(xué)院教授，未來(lái)技術(shù)學(xué)院副院長(zhǎng) ，國(guó)家生物醫(yī)學(xué)成像科學(xué)中心，生物醫(yī)學(xué)前沿創(chuàng)新中心（BIOPIC），膜生物學(xué)國(guó)家重點(diǎn)實(shí)驗(yàn)室研究員、博士生導(dǎo)師。致力于運(yùn)用單分子、超高分辨率熒光成像及操縱技術(shù)研究細(xì)胞結(jié)構(gòu)與功能的關(guān)系，在Science 等期刊發(fā)表文章 90 多篇, 撰寫(xiě)國(guó)外專著 5 部，申請(qǐng)專利 7項(xiàng)，先后承擔(dān)和參與基金委重大儀器專項(xiàng)和科技部863計(jì)劃等8個(gè)國(guó)家級(jí)科研項(xiàng)目，獲 Elsevier Scopus高引青年科學(xué)家獎(jiǎng)和拜爾學(xué)者獎(jiǎng)�，F(xiàn)任中國(guó)生物物理學(xué)會(huì)單分子生物學(xué)專業(yè)委員會(huì)委員、中國(guó)儀器儀表學(xué)會(huì)顯微儀器分會(huì)副理事長(zhǎng)、中國(guó)電子顯微鏡學(xué)會(huì)共聚焦專業(yè)委員會(huì)副主任、美國(guó)細(xì)胞生物學(xué)會(huì)國(guó)際事務(wù)委員會(huì)委員，多模態(tài)跨尺度生物醫(yī)學(xué)成像國(guó)家重大科技基礎(chǔ)設(shè)施副總工程師。
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